Supplementary Table 1. Summary of annotations (Busco, Ensemble, go-terms, ribosomal protein genes) and network analyses for each partition from all phylogenomic all matrices used in this study (Table is converted from partition_map_globle in Rdata).
Supplementary_Table 2. Summary of a total of 164 phylogenomic analyses were transcribed from the literature (Table is converted from analyses_published in Rdata).
Supplementary_Table 3. Summary of a total of 106 phylogenomic analyses conducted in this study (Table is converted from analyses_new in R data).
Supplementary_Table 4. Summary statistics of CAT substitutional categories inferred from different matrices (Table is manualy curated from Tracer result for each PhyloBayes analysis).
Supplementary_Table 5. Summary of amino acid frequencies of 60 categories inferred by C60 model using IQ-TREE (Table is manualy curated from IQtree log file for each analysis).
Supplementary_Table 6. Summary of sensitive analyses with different number of CAT substitutional categories in representative matrices ((Table is converted from analyses_sensitive in Rdata)).
Supplementary_Table 7. Distribution of phylogenetic signal of different models and outgroup sampling for two alternative hypotheses on the animal-root position in Philippe2009, Ryan2013 and Whelan2017_full matrices (Table is converted from au_tests in Rdata).
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